Blacktail,
I mount the barrel horizontally in the vise with the breech end positioned so that I'm pushing down, not pulling up. And leave a little sticking out, so you aren't compressing the threads (Thanks Dennis).
For clamping swamped barrels I made up some tapered shims out of brass sheet stock. I cut some strips 1" x 4", 1" x 3", 1" X 2" and 1" X 1", stacked them up with a dot of superglue between the layers. Like this......
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-Ron