Thanks, everyone, for taking the time to respond to this. I'll file this info away so I can use it "next time". I anticipated that some of you would say that scraping was the way to go instead of sanding. I intended to do just that. I hate sanding for this very reason- you just never seem to get all the scratches out. I can't seem to get that nice cutting edge on a scraper, everywhere, every time, either. I tried but couldn't get the grain to cooperate in certain areas so I went down the path of no return with sand paper.
I also tried burnishing after I started to notice the scratches but I guess I didn't do that right, either.
My stock blank is a piece of highly figured red maple. There is no carving, inlay, or incised lines to pull your attention away from the defects in the wood. I did refine the comb/wrist area several times before deciding it was good enough. I used the cabinet makers rasp over and over again in that hollow area. The grain was such that on the side plate side of the stock, the grain cut beautifully with hand planes, spokeshaves, scrapers, etc, but on the lock side it was completely opposite, everything wanted to bite in. Or vise versa.
I took the offcut from the butt area and set it next to the finished stock. Little brown inclusions in the wood are obvious, and these same spots are visible as defects in the finsh. I don't mind these so much, but when I look at the stock in the bright sunshine, there are scratches or pressed fibers running straight in line with the stock contours, especially in the hollow/comb area. It almost looks like an otherwise beautiful stock was re-finished by someone who didn't know what he was doing.
I am really pleased with the color of the stock, and the sheen of the finish. I haven't rubbed it back with anything, no wax or other possible contaminant. Heck of it is, everything you guys have mentioned, from yellow dye, iodine, bone, antler, 0000 steel wool, renaissance wax, to paraffin oil, I have sitting in the shop, and didn't use any of it. I tried rubbing back a sample piece I had finnished with white scotch bright and didn't like the scratches it left. As usual, I am more confused after finishing 1 gun stock than I was before finishing one. I am looking forward to handling some guns at Dixon's this summer just for comparison.