Bottoming taps aren't supposed to go completely to the bottom. All taps have a chamfer on the front that goes to or below the minor diameter in order to function. The usual chamfers for taps are: taper 7-10 threads, plug (most common) 3-5 threads, modified bottoming 2-1/2-4 threads, semibottoming 2-2-1/2 threads, and bottoming 1-2 threads. Please note that each of these different chamfers is at a different angle by definition (chamfers do not have to be at 45 degree angles). One should also note that as the chamfer gets shorter the torque required to advance the tool goes up, and as torque goes up, tool life goes down and the likelihood of breaking the tap goes up.
To get the breechplug to seal in a tapped hole would generally mean chamfering the end of the plug to or below the minor diameter of the thread, but larger than the diameter of the bore.
By threading with an internal threading bar in a CNC machine one can get close to the bottom, but the normal way in a machine shop to get threads "completely to the bottom" is to cut a relief groove at the bottom of the counterbore. For the home hobbyist, this would mean owning a lathe of sufficient size, internal groove tools and being fairly skilled at lathe operations.