I can't speak to the regular production M. 1803 rifles but the first 15 prototypes that appear to have gone on the Lewis & Clark expedition almost certainly had brown lacquered barrels and case-hardened locks. I got to handle the parts of the #15 rifle researched and copied by the late Ernie Cowan and under the barrel there were a few very small patches of what sure looked like brown lacquer (it definitely was not ruse, dried oil, dirt, etc.) and traces of case hardening could be seen on the inside surface of the lock plate. It wasn't the bright case hardening we're accustomed to seeing but more like a dull mottled grey. Ernie dug up a period recipe that produced visually comparable results.