Aqua fortis, or what every one referrs to is actually Nitric Ferris or Nitric of Iron. To make an educated decision, you need to understand what your dealing with.
True Nitric Ferris is the result of mixing Nitric Acid and distilled water, then adding wrought iron to the solution. The iron is dissolved by the mixture through the reaction of the acid and the iron, known as corrosion or oxidation (basically rust).
When done, meaning the acid will no longer dissolve any more iron, you have Nitric Ferris. At this point the "Acid" is spent. Meaning it is now Neutral and has no more reactionary qualities to the Iron.
To neutralize an acid, you use a "Base" such as baking soda. And by my understanding, that is what certain builders are referring to. However, if you have "nitric ferris", you solution is already neutrealized. So by adding baking soda, you are accomplishing little. The other thing you need to keep in mind, is that the Nitric Ferris will react to the "tannins" in the wood. And that can vary from one end of a blank to the other.
I've been lucky to work a fair amount with Nitric Ferris. And I'm by no means an expert, but my results have been very pleasing to me. So take that at what it is. The best book I can recommend is by Bill Mende and Bill Knight called "Staining and Finishing for Muzzeloading Gun Builders - Method and Materials from 1750-1850" Great read, and Bill Mende is very forthcoming with help.
Good luck.
M